Annual JGI Portal (genome.jgi.doe.gov) Survey - Jan 2013 Question Title * 1. I am (pick all that apply): A scientist collaborating with the JGI on a sequencing or annotation project A scientist focusing on a particular organism or a group of organisms A scientist focusing on a particular biological function A student Other Other (please specify): Question Title * 2. What type of organism are you most interested in (pick all that apply)? Algae Archaea Bacteria Fungi Metagenomes Metazoa Viridiplantae Other Eukaryotes: Question Title * 3. What is your current level of expertise in using the JGI Genome Portal? First Time User Novice Experienced Expert Question Title * 4. I perform the following activities using the JGI Genome Portal or MycoCosm: most used (4) (3) (2) least used (1) N/A Check which genomes are available at the JGI Check which genomes are available at the JGI most used (4) Check which genomes are available at the JGI (3) Check which genomes are available at the JGI (2) Check which genomes are available at the JGI least used (1) Check which genomes are available at the JGI N/A BLAST BLAST most used (4) BLAST (3) BLAST (2) BLAST least used (1) BLAST N/A Annotate genomes Annotate genomes most used (4) Annotate genomes (3) Annotate genomes (2) Annotate genomes least used (1) Annotate genomes N/A Analyze genomes Analyze genomes most used (4) Analyze genomes (3) Analyze genomes (2) Analyze genomes least used (1) Analyze genomes N/A Investigate genes or gene families Investigate genes or gene families most used (4) Investigate genes or gene families (3) Investigate genes or gene families (2) Investigate genes or gene families least used (1) Investigate genes or gene families N/A Compare features of different organisms Compare features of different organisms most used (4) Compare features of different organisms (3) Compare features of different organisms (2) Compare features of different organisms least used (1) Compare features of different organisms N/A Download data Download data most used (4) Download data (3) Download data (2) Download data least used (1) Download data N/A Other (please specify): Question Title * 5. I use the following tools on the JGI Genome Portal or MycoCosm: most used (4) (3) (2) least used (1) N/A Project List Project List most used (4) Project List (3) Project List (2) Project List least used (1) Project List N/A BLAST BLAST most used (4) BLAST (3) BLAST (2) BLAST least used (1) BLAST N/A Genome Browser Genome Browser most used (4) Genome Browser (3) Genome Browser (2) Genome Browser least used (1) Genome Browser N/A Protein and Annotation pages Protein and Annotation pages most used (4) Protein and Annotation pages (3) Protein and Annotation pages (2) Protein and Annotation pages least used (1) Protein and Annotation pages N/A Function Profile (KOG, KEGG, GO) Function Profile (KOG, KEGG, GO) most used (4) Function Profile (KOG, KEGG, GO) (3) Function Profile (KOG, KEGG, GO) (2) Function Profile (KOG, KEGG, GO) least used (1) Function Profile (KOG, KEGG, GO) N/A Synteny and other VISTA tools Synteny and other VISTA tools most used (4) Synteny and other VISTA tools (3) Synteny and other VISTA tools (2) Synteny and other VISTA tools least used (1) Synteny and other VISTA tools N/A Gene search Gene search most used (4) Gene search (3) Gene search (2) Gene search least used (1) Gene search N/A Genome search Genome search most used (4) Genome search (3) Genome search (2) Genome search least used (1) Genome search N/A Organism info or statistics Organism info or statistics most used (4) Organism info or statistics (3) Organism info or statistics (2) Organism info or statistics least used (1) Organism info or statistics N/A Gene Clusters and Trees Gene Clusters and Trees most used (4) Gene Clusters and Trees (3) Gene Clusters and Trees (2) Gene Clusters and Trees least used (1) Gene Clusters and Trees N/A Download Download most used (4) Download (3) Download (2) Download least used (1) Download N/A Help pages Help pages most used (4) Help pages (3) Help pages (2) Help pages least used (1) Help pages N/A Other (please specify): Question Title * 6. Please rate your experience with tools of the Genome Portal and MycoCosm: most satisfied (4) (3) (2) least satisfied (1) N/A Project List Project List most satisfied (4) Project List (3) Project List (2) Project List least satisfied (1) Project List N/A BLAST BLAST most satisfied (4) BLAST (3) BLAST (2) BLAST least satisfied (1) BLAST N/A Genome Browser Genome Browser most satisfied (4) Genome Browser (3) Genome Browser (2) Genome Browser least satisfied (1) Genome Browser N/A Protein and Annotation pages Protein and Annotation pages most satisfied (4) Protein and Annotation pages (3) Protein and Annotation pages (2) Protein and Annotation pages least satisfied (1) Protein and Annotation pages N/A Function Profile (KOG, KEGG, GO) Function Profile (KOG, KEGG, GO) most satisfied (4) Function Profile (KOG, KEGG, GO) (3) Function Profile (KOG, KEGG, GO) (2) Function Profile (KOG, KEGG, GO) least satisfied (1) Function Profile (KOG, KEGG, GO) N/A Synteny and other VISTA tools Synteny and other VISTA tools most satisfied (4) Synteny and other VISTA tools (3) Synteny and other VISTA tools (2) Synteny and other VISTA tools least satisfied (1) Synteny and other VISTA tools N/A Gene search Gene search most satisfied (4) Gene search (3) Gene search (2) Gene search least satisfied (1) Gene search N/A Genome search Genome search most satisfied (4) Genome search (3) Genome search (2) Genome search least satisfied (1) Genome search N/A Organism info or statistics Organism info or statistics most satisfied (4) Organism info or statistics (3) Organism info or statistics (2) Organism info or statistics least satisfied (1) Organism info or statistics N/A Gene Clusters and Trees Gene Clusters and Trees most satisfied (4) Gene Clusters and Trees (3) Gene Clusters and Trees (2) Gene Clusters and Trees least satisfied (1) Gene Clusters and Trees N/A Download Download most satisfied (4) Download (3) Download (2) Download least satisfied (1) Download N/A Help Pages Help Pages most satisfied (4) Help Pages (3) Help Pages (2) Help Pages least satisfied (1) Help Pages N/A Other (please specify): Question Title * 7. What would you change about the tool you use most on portal? Question Title * 8. What tool or feature is the Genome Portal most desperately missing? Question Title * 9. Is there anything else you want to tell us? Question Title * 10. Please provide your email address for contact to address the specific issues you reported: Done