Data Release Questionnaire Thank you for your time and thoughts! We want your help to understand your needs concerning releases of data. Your suggestions will be used to inform our first data release process. We are interested in how you expect single cell RNA-Seq to be released. OK Question Title * 1. What do you expect our releases to contain for single cell RNA-seq experiments? OK Question Title * 2. We want to know how you like to access data in a release. Please rate the following options by how important they are to you. Waste of time Would be nice Must be available Exploring and downloading through a user interface Exploring and downloading through a user interface Waste of time Exploring and downloading through a user interface Exploring and downloading through a user interface Would be nice Exploring and downloading through a user interface Exploring and downloading through a user interface Must be available Programmatic access to files Programmatic access to files Waste of time Programmatic access to files Programmatic access to files Would be nice Programmatic access to files Programmatic access to files Must be available The ability to download the full release at once The ability to download the full release at once Waste of time The ability to download the full release at once The ability to download the full release at once Would be nice The ability to download the full release at once The ability to download the full release at once Must be available Downloading data of interest through metadata query Downloading data of interest through metadata query Waste of time Downloading data of interest through metadata query Downloading data of interest through metadata query Would be nice Downloading data of interest through metadata query Downloading data of interest through metadata query Must be available Are there other ways you would prefer to access the release? OK Question Title * 3. Beyond alignments are there specific information in aligned BAMs you will need for analysis? OK Question Title * 4. How do you want the expression matrices formatted? .arrow .csv (also includes TSV) .h5 (HDF5) .h5ad .loom .mat (matlab) .mtx (matrix market) .npy (serialized numpy matrices) .Robj (serialized R objects) Is there another file format you would prefer? OK Question Title * 5. What analysis outputs are most important to you to be made available for single cell RNA-Seq analysis? Waste of time Would be nice Must be available Raw counts Raw counts Waste of time Raw counts Raw counts Would be nice Raw counts Raw counts Must be available TPMs TPMs Waste of time TPMs TPMs Would be nice TPMs TPMs Must be available CPMs CPMs Waste of time CPMs CPMs Would be nice CPMs CPMs Must be available FPKMs FPKMs Waste of time FPKMs FPKMs Would be nice FPKMs FPKMs Must be available Between Sample Normalized Matrix Between Sample Normalized Matrix Waste of time Between Sample Normalized Matrix Between Sample Normalized Matrix Would be nice Between Sample Normalized Matrix Between Sample Normalized Matrix Must be available Batch Effect Corrected Matrix Batch Effect Corrected Matrix Waste of time Batch Effect Corrected Matrix Batch Effect Corrected Matrix Would be nice Batch Effect Corrected Matrix Batch Effect Corrected Matrix Must be available Unfiltered Expression Unfiltered Expression Waste of time Unfiltered Expression Unfiltered Expression Would be nice Unfiltered Expression Unfiltered Expression Must be available Expert Pre-filtered Expression Expert Pre-filtered Expression Waste of time Expert Pre-filtered Expression Expert Pre-filtered Expression Would be nice Expert Pre-filtered Expression Expert Pre-filtered Expression Must be available Filtered Expression (on-the-fly) Filtered Expression (on-the-fly) Waste of time Filtered Expression (on-the-fly) Filtered Expression (on-the-fly) Would be nice Filtered Expression (on-the-fly) Filtered Expression (on-the-fly) Must be available Other (please specify) OK DONE