Georgia Cancer Center Bioinformatics Satisfaction Survey

1.How often have you or your lab used this Shared Resource in the last year

2.Which Services or Equipment did you use for your experiments?

Computational Analysis Hourly rate

*fastq only

6-12 samples with fastq QC report

QC report (fastq & bam alignment)

Tables (fold changes & p-values, 1~3 comparisons)

Whole genome comparisons (volcano, PCA, MA & clustering)

Pathway analysis (universal std., heatmaps, GO & IPA, 2 groups)

Pathway analysis (gene candidates, heatmaps, GO & IPA, 2~3 groups)

lncRNA tables (fold changes & p-values; 1~3 comparisons)

mRNA & lncRNA association

Splicing isoform Analysis (6 samples; 3 vs 3 comparisons)

Fusion gene (6 samples; 3 vs 3 somatic comparisons)

ChIP-seq:Tables (Enriched Peak fold changes & p-values, 1~3 comparisons)

Whole genome analysis (1~3 somatic comparisons)

Pathway analysis (universal std., heatmaps, GO & IPA, 2 groups)

Pathway analysis (gene candidates, heatmaps, GO & IPA, 2~3 groups)

miRNA: Table (detections with 12 individual normalized counts)

mRNA & miRNA association

DNA-Seq: Tables (6 germline or 3 vs 3 somatic mutation detections with VEP annotations

Copy Number CNV (12 germline, 6 somatic CNVs)

Methyl-Seq: Tables (3 vs 3 somatic differentially methylated regions)

Single cell RNA analysis: Cell ranger & Loupe cell browser with fastq and analytic matrics transfer

Single cell RNA analysis: Per aggregation

Single cell RNA analysis: Seurat V3

Integration of two datasets: Pathway analysis (universal std., heatmaps, GO & IPA, 2 groups)

Integration of two datasets: Pathway analysis (gene candidates, heatmaps, GO & IPA, 2~3 groups)

IPA (user access)

GEO Deposit

Extra analyses

Do not know the exact service-- Please provide for me

Other (please specify)

4.Were you satisfied with the quality and presentation of the data?

Other (please specify)

5.How would you rate your interaction with the GCC Bioinformatics Shared Resource personnel

Very unprofessional, communicaton skills were not adequate

1 star

Somewhat professional, need to work on communication skills

2 stars

Service and communication were adequate

3 stars

Service and communication were very good

4 stars

Service and communication were excellent

5 stars

6.Would you recommend this Shared Resource to other researchers

Yes

No

7.Do you have any suggestions to improve the GCC Bioinformatics Shared Resource