1.What kind of RNASeq Data do you/will you have?

Traditional RNA-Seq (PolyA)

Tag Seq

Rip Seq

Other (please specify)

2.Do you have a genome and transcriptome reference?

I have a genome

I have a transcriptome

I have both

I do not have a transcriptome and plan to assemble one

Other (please specify)

3.What analysis steps are you currently at with your data?

Quality assessment of raw data

Preprocessing of raw data

Mapping to genome

Mapping to transcriptome

Transcriptome assembly

Differential gene expression analysis

Downstream analysis of differential gene expression data

Other (please specify)

4.What analysis steps on your data would you like help with during class?

Quality assessment of raw data

Preprocessing of raw data

Mapping to genome

Mapping to transcriptome

Transcriptome assembly

Differential gene expression analysis

Novel isoform detection

Downstream analysis of differential gene expression data

Other (please specify)

5.Is your data currently on TACC (preferably lonestar5)?

Yes

No but I can move it there

Other (please specify)