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The GATK team at the Broad Institute is planning a workshop for users this Fall. The workshop will focus on one specific topic; this is your opportunity to tell us what topic would be of most interest to you, and what format would best serve your needs.

Question Title

* 1. Which of the following topics are you most interested in learning about?

Best practices for variant detection (from fastQ to VCF)

Using the GATK to analyze variant calls

Writing custom pipeline scripts in the GATK using Queue

Writing a GATK walker to perform your specific analysis

How to design your sequencing experiment

Other (please specify)

Question Title

* 2. How many days should the workshop last?

1.5

2.5

Question Title

* 3. What types of activities should the workshop include?

Talks about GATK tools (operation and performance)

Talks about analysis scenarios (scientific applications)

Hands-on software setup (installation and configuration)

Hands-on tutorials (step-by-step analysis of real data)

Other (please specify)